Pcons.net Protein Structure Prediction Meta Server Thursday, August 13 2020
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23556 : hxb2_pcons

Your submitted sequence: sequence (288 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PCONS (only used 40 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
rpsblast.5
5e-090.3960.4250.541 3F9K_IN/A
2
rpsblast.3
8e-100.3850.4040.482 1K6Y_D1.10.10.200.2.1 3.30.420.10.3.1
3
pgenthreader.2
128.5790.3650.3950.515 3F9K_AN/A
4
pgenthreader.3
122.4410.3530.3870.523 1K6Y_A1.10.10.200.2.1 3.30.420.10.3.1
5
rpsblast.4
4e-090.3820.3830.388 3L3U_BN/A
6
ffas.3
-0.941E+020.3450.3790.515 3F9K_AN/A
7
pgenthreader.1
129.0970.3510.3780.486 1EX4_A3.30.420.10.3.1 2.30.30.10.2.1
8
rpsblast.6
1e-080.3680.3700.378 3KKS_AN/A
9
rpsblast.2
8e-150.3640.3590.341 4CF8_BN/A
10
rpsblast.8
4e-050.3530.3460.320 1C6V_A3.30.420.10.3.2
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
© 2006 Stockholm University, Stockholm Bioinformatics Center