Pcons.net Protein Structure Prediction

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Saturday, April 20 2024

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Submission

23556 : hxb2_pcons

Your submitted sequence: sequence (288 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PCONS (only used 40 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	rpsblast.5	5e-09	0.396	0.425	0.541	3F9K_I	N/A
2	rpsblast.3	8e-10	0.385	0.404	0.482	1K6Y_D	1.10.10.200.2.1 3.30.420.10.3.1
3	pgenthreader.2	128.579	0.365	0.395	0.515	3F9K_A	N/A
4	pgenthreader.3	122.441	0.353	0.387	0.523	1K6Y_A	1.10.10.200.2.1 3.30.420.10.3.1
5	rpsblast.4	4e-09	0.382	0.383	0.388	3L3U_B	N/A
6	ffas.3	-0.941E+02	0.345	0.379	0.515	3F9K_A	N/A
7	pgenthreader.1	129.097	0.351	0.378	0.486	1EX4_A	3.30.420.10.3.1 2.30.30.10.2.1
8	rpsblast.6	1e-08	0.368	0.370	0.378	3KKS_A	N/A
9	rpsblast.2	8e-15	0.364	0.359	0.341	4CF8_B	N/A
10	rpsblast.8	4e-05	0.353	0.346	0.320	1C6V_A	3.30.420.10.3.2

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.