Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, April 19 2024

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Submission

23551 : CNR89173.1 UNCHARACTERIZED CONSERVED PROTEIN [NEISSERIA GONORRHOEAE]

Your submitted sequence: sequence (359 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 30 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	pgenthreader.6	36.235	0.029	0.051	0.140	1CP9_B	3.60.20.10.20.1 2.30.120.10.1.1 1.10.1400.10.1.2
2	ffas.10	-0.875E+01	0.022	0.037	0.096	1GEF_A	3.40.1350.10.2.1
3	ffas.6	-0.968E+01	0.022	0.037	0.097	1OB8_A	3.40.1350.10.1.1
4	rpsblast.10	4.9	0.006	0.001	-0.019	1QZV_U	N/A
5	rpsblast.5	0.14	0.008	0.010	0.016	1QZV_U	N/A
6	pgenthreader.10	35.307	0.024	0.073	0.270	1UUR_A	1.20.58.240.1.1 2.60.40.340.3.1 1.10.238.10.28.1 3.30.505.10.18.1
7	ffas.4	-0.112E+02	0.021	0.037	0.100	1Y88_A	3.40.91.40.1.1 1.10.150.20.10.1
8	ffas.9	-0.906E+01	0.021	0.034	0.088	2EO0_A	N/A
9	pgenthreader.7	36.056	0.019	0.026	0.054	2O3H_A	N/A
10	rpsblast.2	2e-08	0.026	0.036	0.075	2PFF_B	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.