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© Arne Elofsson

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23551 : CNR89173.1 UNCHARACTERIZED CONSERVED PROTEIN [NEISSERIA GONORRHOEAE]

Your submitted sequence: sequence (359 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PCONS (only used 30 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
ffas.3
-0.142E+020.0360.0920.316 2W00_AN/A
2
ffas.2
-0.143E+020.0350.0840.280 2Y3T_AN/A
3
pgenthreader.3
37.4760.0300.0830.296 2QYU_AN/A
4
pgenthreader.4
37.0990.0280.0830.303 3PVL_AN/A
5
pgenthreader.5
36.7040.0270.0830.306 4JEH_AN/A
6
pgenthreader.9
35.6120.0310.0800.275 4K8Z_AN/A
7
ffas.1
-0.415E+020.0410.0800.235 3H1T_AN/A
8
pgenthreader.8
35.7460.0320.0790.266 3MOG_AN/A
9
pgenthreader.10
35.3070.0240.0730.270 1UUR_A1.20.58.240.1.1 2.60.40.340.3.1 1.10.238.10.28.1 3.30.505.10.18.1
10
pgenthreader.1
41.1390.0560.0730.142 3H1T_AN/A
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
© 2006 Stockholm University, Stockholm Bioinformatics Center