Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, April 19 2024

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Submission

23539 : RAT DIHYDROOROTATE DEHYDROGENASE [RATTUS NORVEGICUS]

Your submitted sequence: sequence (395 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.15	-0.647E+02	0.506	0.531	0.632	1DOR_A	3.20.20.70.4.1 2.30.26.10.1.1
2	ffas.16	-0.598E+02	0.414	0.436	0.522	1EP1_A	3.20.20.70.44.1
3	pgenthreader.10	92.252	0.405	0.441	0.584	1EP3_A	3.20.20.70.44.1
4	ffas.8	-0.100E+03	0.517	0.550	0.684	1F76_A	3.20.20.70.46.2
5	pgenthreader.3	185.632	0.486	0.520	0.657	1F76_A	3.20.20.70.46.2
6	rpsblast.9	6e-48	0.448	0.477	0.595	1F76_B	3.20.20.70.46.2
7	pgenthreader.8	97.978	0.447	0.467	0.548	1JUB_A	3.20.20.70.4.1 2.30.26.10.1.1
8	rpsblast.7	1e-52	0.449	0.464	0.526	1JUB_B	3.20.20.70.4.1 2.30.26.10.1.1
9	ffas.20	-0.106E+02	0.226	0.260	0.398	1P0K_A	3.20.20.70.33.1
10	ffas.6	-0.103E+03	0.571	0.593	0.681	1TV5_A	3.20.20.70.46.3

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.