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© Arne Elofsson

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23537 : NP_001005335.1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L ISOFORM B [HOMO SAPIENS]

Your submitted sequence: sequence (456 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 40 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
ffas.15
-0.442E+020.0300.0610.185 1CVJ_A3.30.70.330.17.1 3.30.70.330.16.1
2
ffas.13
-0.447E+020.0270.0600.192 1FNX_H3.30.70.330.12.1 3.30.70.330.9.1
3
ffas.9
-0.463E+020.0280.0460.116 1FXL_A3.30.70.330.12.1 3.30.70.330.9.1
4
pgenthreader.7
41.5320.0520.0510.045 1QM9_A3.30.70.330.34.1 3.30.70.330.28.1
5
pgenthreader.8
41.5320.0310.0420.084 1QM9_A3.30.70.330.34.1 3.30.70.330.28.1
6
ffas.16
-0.441E+020.0710.0860.146 1SJR_A3.30.70.330.40.1
7
rpsblast.7
2e-110.0300.0350.057 1WHY_AN/A
8
pgenthreader.10
26.6400.0020.0060.023 2ADB_A3.30.70.330.40.1
9
pgenthreader.9
26.6400.0460.0650.142 2ADB_A3.30.70.330.40.1
10
ffas.3
-0.664E+020.0450.1000.318 2ADC_AN/A
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
© 2006 Stockholm University, Stockholm Bioinformatics Center