Pcons.net Protein Structure Prediction

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Wednesday, April 24 2024

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Submission

23537 : NP_001005335.1 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L ISOFORM B [HOMO SAPIENS]

Your submitted sequence: sequence (456 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PCONS (only used 40 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	pgenthreader.1	37.657	0.108	0.154	0.339	3TYT_A	N/A
2	rpsblast.10	2e-10	0.112	0.154	0.321	3TYT_A	N/A
3	pgenthreader.3	51.936	0.097	0.137	0.299	4CKO_A	N/A
4	ffas.2	-0.828E+02	0.067	0.128	0.371	3TO8_A	N/A
5	ffas.1	-0.832E+02	0.065	0.123	0.356	3S01_A	N/A
6	ffas.5	-0.562E+02	0.077	0.116	0.272	2GHP_A	N/A
7	ffas.6	-0.538E+02	0.076	0.116	0.274	3SMZ_A	N/A
8	ffas.3	-0.664E+02	0.045	0.100	0.318	2ADC_A	N/A
9	rpsblast.4	3e-13	0.075	0.098	0.190	2EVZ_A	N/A
10	ffas.17	-0.437E+02	0.080	0.096	0.158	2E5I_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.