Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Thursday, April 25 2024

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Submission

23501 : cytochrome b

Your submitted sequence: sequence (380 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 32 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.3	-0.144E+03	0.388	0.485	0.875	1BCC_C	1.20.810.10.1.1
2	ffas.1	-0.146E+03	0.382	0.481	0.875	1BE3_C	1.20.810.10.1.1
3	ffas.4	-0.137E+03	0.400	0.494	0.871	1EZV_C	1.20.810.10.1.2
4	rpsblast.1	8e-67	0.398	0.491	0.864	1PPJ_P	1.20.810.10.1.1
5	ffas.8	-0.959E+02	0.246	0.288	0.456	1Q90_B	1.20.810.10.2.1
6	pgenthreader.8	80.109	0.109	0.173	0.427	1Q90_B	1.20.810.10.2.1
7	rpsblast.6	2e-57	0.236	0.280	0.456	1Q90_B	1.20.810.10.2.1
8	ffas.12	-0.693E+02	0.073	0.107	0.242	1Q90_D	N/A
9	pgenthreader.10	52.987	0.068	0.096	0.208	1Q90_D	N/A
10	ffas.10	-0.925E+02	0.229	0.265	0.407	1VF5_A	1.20.810.10.2.1

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.