Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, April 26 2024

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Submission

23496 : SP|P10145|IL8_HUMAN INTERLEUKIN-8 OS=HOMO SAPIENS OX=9606 GN=CXCL8 PE=1 SV=1

Your submitted sequence: sequence (99 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.15	-0.384E+02	0.414	0.421	0.450	1DOK_A	2.40.50.40.12.1
2	pgenthreader.10	53.748	0.392	0.420	0.531	1EOT_A	N/A
3	ffas.16	-0.383E+02	0.390	0.408	0.481	1ESR_A	2.40.50.40.12.2
4	ffas.4	-0.418E+02	0.443	0.416	0.308	1F9P_A	2.40.50.40.8.1
5	pgenthreader.5	58.102	0.422	0.411	0.369	1F9P_A	2.40.50.40.8.1
6	ffas.9	-0.396E+02	0.303	0.333	0.455	1HA6_A	2.40.50.40.7.1
7	ffas.1	-0.423E+02	0.451	0.460	0.498	1ICW_A	2.40.50.40.11.1
8	ffas.2	-0.421E+02	0.414	0.421	0.451	1IKL_A	N/A
9	ffas.13	-0.394E+02	0.357	0.368	0.413	1J8I_A	2.40.50.40.22.1
10	ffas.18	-0.381E+02	0.382	0.356	0.254	1JE4_A	2.40.50.40.3.2

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.