Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, April 26 2024

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Submission

23495 : SP|P62314|SMD1_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 OS=HOMO SAPIENS OX=9606 GN=SNRPD1 PE=1 SV=1

Your submitted sequence: sequence (119 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast itasser hhpred2

PMODELLER (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.1	-0.630E+02	0.481	0.477	0.460	1B34_A	2.30.30.100.10.1
2	ffas.4	-0.435E+02	0.473	0.467	0.441	1D3B_A	2.30.30.100.4.1
3	pgenthreader.4	55.602	0.469	0.464	0.446	1D3B_A	2.30.30.100.4.1
4	rpsblast.8	1e-22	0.460	0.449	0.403	1D3B_A	2.30.30.100.4.1
5	ffas.12	-0.312E+02	0.446	0.446	0.448	1I4K_A	2.30.30.100.1.5
6	ffas.13	-0.307E+02	0.420	0.417	0.403	1I81_A	2.30.30.100.1.1
7	ffas.17	-0.260E+02	0.429	0.434	0.453	1I8F_A	2.30.30.100.1.2
8	ffas.9	-0.343E+02	0.424	0.421	0.409	1LJO_A	2.30.30.100.6.1
9	ffas.11	-0.327E+02	0.437	0.443	0.465	1LOJ_A	2.30.30.100.1.1
10	ffas.8	-0.372E+02	0.433	0.441	0.472	1M5Q_A	2.30.30.100.5.1 3.30.310.60.1.1

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.