Pcons.net Protein Structure Prediction Meta Server Wednesday, June 29 2022
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© Arne Elofsson

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23495 : SP|P62314|SMD1_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 OS=HOMO SAPIENS OX=9606 GN=SNRPD1 PE=1 SV=1

Your submitted sequence: sequence (119 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast itasser hhpred2

PMODELLER (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
ffas.1
-0.630E+020.4810.4770.460 1B34_A2.30.30.100.10.1
2
ffas.4
-0.435E+020.4730.4670.441 1D3B_A2.30.30.100.4.1
3
pgenthreader.4
55.6020.4690.4640.446 1D3B_A2.30.30.100.4.1
4
rpsblast.8
1e-220.4600.4490.403 1D3B_A2.30.30.100.4.1
5
ffas.12
-0.312E+020.4460.4460.448 1I4K_A2.30.30.100.1.5
6
ffas.13
-0.307E+020.4200.4170.403 1I81_A2.30.30.100.1.1
7
ffas.17
-0.260E+020.4290.4340.453 1I8F_A2.30.30.100.1.2
8
ffas.9
-0.343E+020.4240.4210.409 1LJO_A2.30.30.100.6.1
9
ffas.11
-0.327E+020.4370.4430.465 1LOJ_A2.30.30.100.1.1
10
ffas.8
-0.372E+020.4330.4410.472 1M5Q_A2.30.30.100.5.1 3.30.310.60.1.1
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
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