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© Arne Elofsson

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23495 : SP|P62314|SMD1_HUMAN SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 OS=HOMO SAPIENS OX=9606 GN=SNRPD1 PE=1 SV=1

Your submitted sequence: sequence (119 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast itasser hhpred2

PCONS (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
ffas.1
-0.630E+020.4810.4770.460 1B34_A2.30.30.100.10.1
2
ffas.4
-0.435E+020.4730.4670.441 1D3B_A2.30.30.100.4.1
3
ffas.2
-0.545E+020.4680.4670.461 2Y9A_DN/A
4
pgenthreader.4
55.6020.4690.4640.446 1D3B_A2.30.30.100.4.1
5
rpsblast.1
7e-330.4490.4600.502 4F7U_AN/A
6
rpsblast.6
1e-230.4620.4580.441 4C92_DN/A
7
pgenthreader.2
57.7060.4480.4510.461 4M75_GN/A
8
pgenthreader.6
49.9280.4560.4490.420 2Y9A_FN/A
9
rpsblast.8
1e-220.4600.4490.403 1D3B_A2.30.30.100.4.1
10
pgenthreader.5
52.6060.4650.4470.374 2Y9A_DN/A
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
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