Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Saturday, April 20 2024

Main Menu

Submission

23449 : XP_027255780.1 DELTA-TYPE OPIOID RECEPTOR ISOFORM X2 [CRICETULUS GRISEUS]

Your submitted sequence: sequence (385 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 40 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.8	-0.770E+02	0.107	0.195	0.549	1GZM_A	1.20.1070.10.6.1
2	rpsblast.2	4e-06	0.033	0.031	0.022	1HOF_A	N/A
3	pgenthreader.9	71.149	0.117	0.180	0.430	1U19_A	1.20.1070.10.6.1
4	ffas.2	-0.871E+02	0.116	0.210	0.585	2KS9_A	N/A
5	pgenthreader.2	17.000	0.139	0.204	0.463	2KS9_A	N/A
6	pgenthreader.3	17.000	0.000	0.003	0.014	2KS9_A	N/A
7	ffas.1	-0.890E+02	0.057	0.143	0.488	2LNL	N/A
8	pgenthreader.8	75.660	0.062	0.128	0.390	2LNL_A	N/A
9	rpsblast.1	1e-06	0.030	0.030	0.029	2LOW_A	N/A
10	rpsblast.3	1e-05	0.028	0.074	0.260	2PFF_B	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.