Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Saturday, April 20 2024

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Submission

23439 : mmp9

Your submitted sequence: sequence (707 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PCONS (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.1	-0.151E+03	0.216	0.299	0.629	1CK7_A	3.40.390.10.10.2 2.10.10.10.3.2 2.10.10.10.2.2 2.10.10.10.2.1 2.110.10.10.3.1
2	pgenthreader.1	237.689	0.172	0.260	0.614	1CK7_A	3.40.390.10.10.2 2.10.10.10.3.2 2.10.10.10.2.2 2.10.10.10.2.1 2.110.10.10.3.1
3	ffas.3	-0.123E+03	0.170	0.216	0.400	1L6J_A	1.10.101.10.1.2 3.40.390.10.2.7 2.10.10.10.3.1 2.10.10.10.3.1 2.10.10.10.2.1
4	rpsblast.1	4e-77	0.169	0.215	0.400	1L6J_A	1.10.101.10.1.2 3.40.390.10.2.7 2.10.10.10.3.1 2.10.10.10.3.1 2.10.10.10.2.1
5	pgenthreader.5	147.119	0.135	0.197	0.447	1SU3_A	3.40.390.10.10.1 2.110.10.10.4.1
6	pgenthreader.6	144.911	0.141	0.192	0.397	1FBL_A	N/A
7	ffas.2	-0.129E+03	0.152	0.191	0.348	1SU3_A	3.40.390.10.10.1 2.110.10.10.4.1
8	pgenthreader.2	163.242	0.137	0.190	0.400	1L6J_A	1.10.101.10.1.2 3.40.390.10.2.7 2.10.10.10.3.1 2.10.10.10.3.1 2.10.10.10.2.1
9	pgenthreader.4	149.511	0.132	0.182	0.383	4FVL_A	N/A
10	ffas.5	-0.982E+02	0.134	0.177	0.347	1FBL_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.