Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Wednesday, April 24 2024

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Submission

23423 : Ph domain of my protein

Your submitted sequence: sequence (116 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.5	-0.557E+02	0.492	0.492	0.493	1EAZ_A	2.30.29.30.5.1
2	ffas.4	-0.564E+02	0.526	0.526	0.524	1FAO_A	2.30.29.30.13.1
3	pgenthreader.8	54.831	0.512	0.517	0.539	1FAO_A	2.30.29.30.13.1
4	pgenthreader.1	59.664	0.496	0.517	0.601	1FGY_A	2.30.29.30.2.1
5	ffas.14	-0.516E+02	0.464	0.483	0.557	1H10_A	2.30.29.30.1.1
6	pgenthreader.7	55.359	0.514	0.517	0.531	1U29_A	2.30.29.30.2.1
7	ffas.20	-0.503E+02	0.521	0.527	0.551	1U2B_A	2.30.29.30.2.1
8	rpsblast.3	4e-08	0.412	0.407	0.385	1UNQ_A	2.30.29.30.1.1
9	ffas.12	-0.529E+02	0.396	0.407	0.452	1V5P_A	N/A
10	ffas.2	-0.575E+02	0.478	0.484	0.506	1V5U_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.