Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, April 19 2024

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Submission

23397 : LpAFP1

Your submitted sequence: sequence (14 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 30 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcomb	ProQ2	Template	CATH
1	rpsblast.4	108	0.036	0.178	1GXR_A	2.130.10.10.2.1
2	ffas.6	-0.763E+00	0.064	0.320	1HY9_A	4.10.40.30.1.1
3	rpsblast.8	123	0.046	0.231	1K8K_C	2.130.10.10.5.1
4	pgenthreader.6	14.000	0.041	0.206	1M06_G	2.60.120.20.28.1
5	ffas.1	-0.132E+01	0.049	0.245	1MZW_B	N/A
6	rpsblast.1	52	0.032	0.162	1RI6_A	2.130.10.10.10.1
7	pgenthreader.3	14.000	0.040	0.202	1U19_A	1.20.1070.10.6.1
8	pgenthreader.7	14.000	0.078	0.391	1VER_A	N/A
9	rpsblast.2	78	0.016	0.078	1W6S_A	2.140.10.10.1.1
10	ffas.10	-0.660E+00	0.054	0.269	2C1L_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.