Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, April 19 2024

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Submission

23395 : lpa3

Your submitted sequence: sequence (353 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PMODELLER (only used 40 models from 3 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.5	-0.876E+02	0.140	0.237	0.627	1GZM_A	1.20.1070.10.6.1
2	rpsblast.3	0.067	0.030	0.022	-0.011	1HOF_A	N/A
3	pgenthreader.2	65.306	0.177	0.240	0.493	1U19_A	1.20.1070.10.6.1
4	rpsblast.5	0.47	0.018	0.020	0.026	2KOE_A	N/A
5	ffas.9	-0.787E+02	0.149	0.248	0.644	2KS9_A	N/A
6	pgenthreader.1	76.393	0.154	0.214	0.453	2KS9_A	N/A
7	ffas.10	-0.717E+02	0.074	0.157	0.488	2LNL	N/A
8	pgenthreader.7	56.097	0.073	0.141	0.414	2LNL_A	N/A
9	rpsblast.1	2e-21	0.036	0.053	0.119	2LQ4_P	N/A
10	rpsblast.2	0.002	0.040	0.089	0.283	2PFF_B	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.