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© Arne Elofsson

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23299 : NP_001354919.1 E3 UBIQUITIN-PROTEIN LIGASE MDM2 ISOFORM 2 [HOMO SAPIENS]

Your submitted sequence: sequence (491 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast lomets itasser hhpred2

PCONS (only used 9 models from 1 methods the score is NOT RELIABLE, models are sorted by Pcons score)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
rpsblast.6
2e-22-nanN/AN/A / 0.0002C6A_AN/A
2
rpsblast.7
1e-20-nanN/AN/A / 0.0002CR8_AN/A
3
rpsblast.1
4e-52-nanN/AN/A / 0.0002LZG_AN/A
4
rpsblast.8
2e-12-nanN/AN/A / 0.0002VJE_CN/A
5
rpsblast.9
4e-11-nanN/AN/A / 0.0002VJE_DN/A
6
rpsblast.5
9e-43-nanN/AN/A / 0.0003FEA_AN/A
7
rpsblast.4
4e-44-nanN/AN/A / 0.0004J74_AN/A
8
rpsblast.3
9e-46-nanN/AN/A / 0.0004N5T_AN/A
9
rpsblast.2
1e-47-nanN/AN/A / 0.0004OGN_AN/A
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
© 2006 Stockholm University, Stockholm Bioinformatics Center