Pcons.net Protein Structure Prediction

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Saturday, April 20 2024

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Submission

23270 : James Davidson

Your submitted sequence: sequence (172 aa)

Ready methods: PCONS PMODELLER ffas pgenthreader rpsblast
Queued locally: blast itasser hhpred2

PCONS (only used 39 models from 3 methods the score is NOT RELIABLE, models are sorted by Pcomb score)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.9	-0.575E+02	0.551	0.592	0.758	2W3L_A	N/A
2	ffas.15	-0.560E+02	0.542	0.591	0.786	3IHD_A	N/A
3	rpsblast.3	3e-49	0.542	0.590	0.781	4LXD_A	N/A
4	rpsblast.1	1e-49	0.536	0.584	0.778	2XA0_A	1.10.238.10.33.2 3.10.450.30.3.1 1.10.10.10.5.1 1.20.90.10.2.5 3.40.50.1820.4.1 2.130.10.120.1.1 1.10.10.10.1.1 3.60.15.10.2.1 3.40.50.150.28.1 1.10.150.170.1.1 2.40.10.10.5.1 2.40.10.10.7.1 1.10.418.10.10.1 2.60.120.260.9.1 2.130.10.80.1.1 2.60.40.10.16.1 3.30.1110.20.2.1 3.40.1280.10.7.1 3.90.226.10.13.1 3.90.226.10.16.1 2.60.270.20.1.2 3.40.50.410.5.1
5	pgenthreader.5	102.319	0.532	0.584	0.791	3ILB_A	N/A
6	ffas.13	-0.564E+02	0.540	0.583	0.753	2O2M_A	N/A
7	rpsblast.2	3e-49	0.533	0.582	0.780	3SP7_A	N/A
8	ffas.2	-0.633E+02	0.554	0.581	0.691	1G5M_A	1.10.437.10.3.1
9	pgenthreader.1	115.639	0.543	0.580	0.730	1G5M_A	1.10.437.10.3.1
10	pgenthreader.2	112.132	0.539	0.578	0.734	4LXD_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.