Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Wednesday, April 17 2024

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Submission

23233 : SP|Q8N6M3|FITM2_HUMAN FAT STORAGE-INDUCING TRANSMEMBRANE PROTEIN 2 OS=HOMO SAPIENS OX=9606 GN=FITM2 PE=1 SV=1

Your submitted sequence: sequence (262 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PMODELLER (only used 39 models from 4 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	blast.5	14	0.000	0.006	0.030	1CCW_C	3.40.50.280.1.1
2	ffas.1	-0.140E+02	0.037	0.062	0.161	1D2T_A	1.20.144.10.2.1
3	pgenthreader.8	28.972	0.037	0.116	0.432	1J4N_A	1.20.1080.10.1.2
4	ffas.4	-0.749E+01	0.050	0.114	0.370	1KQF_C	1.20.950.20.1.1
5	ffas.8	-0.720E+01	0.040	0.067	0.174	1QI9_A	1.10.606.10.1.1
6	rpsblast.3	0.14	0.057	0.119	0.368	1QI9_A	1.10.606.10.1.1
7	rpsblast.4	0.16	0.047	0.121	0.416	1UP8_A	1.10.606.10.3.1
8	rpsblast.6	9.1	0.006	0.005	0.003	1ZNN_E	N/A
9	ffas.3	-0.132E+02	0.037	0.062	0.164	2A96_A	1.20.144.10.2.2
10	rpsblast.10	46	0.024	0.023	0.020	2GOF_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.