Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Wednesday, April 24 2024

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Submission

23163 : MPP2——p

Your submitted sequence: sequence (552 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PMODELLER (only used 49 models from 4 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.9	-0.690E+02	0.053	0.091	0.245	1GKY_A	N/A
2	ffas.1	-0.899E+02	0.090	0.130	0.292	1JXM_A	2.30.30.40.22.1 3.40.50.300.119.1 3.30.63.10.1.2
3	ffas.8	-0.702E+02	0.067	0.099	0.227	1KGD_A	3.40.50.300.87.1 3.30.63.10.1.1
4	pgenthreader.10	77.280	0.091	0.110	0.186	1KGD_A	3.40.50.300.87.1 3.30.63.10.1.1
5	pgenthreader.1	15.791	0.095	0.137	0.304	1KJW_A	2.30.30.40.22.1 3.40.50.300.119.1 3.30.63.10.1.2
6	pgenthreader.2	15.791	0.004	0.007	0.018	1KJW_A	2.30.30.40.22.1 3.40.50.300.119.1 3.30.63.10.1.2
7	pgenthreader.3	15.791	0.001	0.001	0.001	1KJW_A	2.30.30.40.22.1 3.40.50.300.119.1 3.30.63.10.1.2
8	ffas.10	-0.677E+02	0.052	0.092	0.254	1LVG_A	3.30.63.10.2.3 3.40.50.300.121.2
9	ffas.6	-0.774E+02	0.068	0.110	0.276	1T3L_A	2.30.30.40.27.1 3.40.50.300.58.1
10	blast.8	0.001	0.007	0.010	0.020	1U37_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.