Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, April 26 2024

Main Menu

Submission

23138 : NP_001002824.1 MYOBLAST DETERMINATION PROTEIN 1 [SUS SCROFA]

Your submitted sequence: sequence (319 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PMODELLER (only used 42 models from 4 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.14	-0.127E+02	0.050	0.051	0.057	1A0A_A	4.10.280.10.5.1
2	ffas.11	-0.140E+02	0.062	0.066	0.081	1AM9_A	4.10.280.10.3.1
3	ffas.9	-0.152E+02	0.065	0.062	0.048	1AN2_A	4.10.280.10.1.1
4	ffas.13	-0.131E+02	0.042	0.044	0.053	1AN4_A	4.10.280.10.6.1
5	rpsblast.6	3e-16	0.051	0.044	0.015	1AN4_B	4.10.280.10.6.1
6	ffas.7	-0.160E+02	0.066	0.067	0.069	1HLO_A	4.10.280.10.1.1
7	rpsblast.5	1e-16	0.070	0.073	0.087	1HLO_A	4.10.280.10.1.1
8	ffas.1	-0.264E+02	0.069	0.069	0.071	1MDY_A	4.10.280.10.4.1
9	pgenthreader.1	64.056	0.090	0.094	0.109	1MDY_A	4.10.280.10.4.1
10	rpsblast.1	3e-19	0.076	0.075	0.070	1MDY_B	4.10.280.10.4.1

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.