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© Arne Elofsson

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23138 : NP_001002824.1 MYOBLAST DETERMINATION PROTEIN 1 [SUS SCROFA]

Your submitted sequence: sequence (319 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PCONS (only used 42 models from 4 methods the score is NOT RELIABLE, models are sorted by Pcomb score)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
pgenthreader.1
64.0560.0900.0940.109 1MDY_A4.10.280.10.4.1
2
pgenthreader.2
50.1150.0940.0920.086 2YPA_AN/A
3
pgenthreader.3
40.3090.0870.0830.068 2YPA_BN/A
4
pgenthreader.5
38.2450.0870.0820.060 2QL2_BN/A
5
blast.1
9e-240.0820.0810.077 1MDY_D4.10.280.10.4.1
6
rpsblast.9
1e-150.0730.0760.087 2YPA_AN/A
7
blast.2
0.0030.0800.0750.054 2YPA_AN/A
8
rpsblast.1
3e-190.0760.0750.070 1MDY_B4.10.280.10.4.1
9
rpsblast.7
5e-160.0760.0740.066 1NKP_E4.10.280.10.1.1
10
rpsblast.5
1e-160.0700.0730.087 1HLO_A4.10.280.10.1.1
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
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