Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Friday, April 19 2024

Main Menu

Submission

23060 : NP_003097.1 TRANSCRIPTION FACTOR SOX-2 [HOMO SAPIENS]

Your submitted sequence: sequence (317 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PMODELLER (only used 49 models from 4 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	blast.9	4e-05	0.109	0.101	0.069	1CG7_A	1.10.30.10.4.2
2	ffas.20	-0.321E+02	0.140	0.137	0.123	1CG7_A	1.10.30.10.4.2
3	rpsblast.3	1e-31	0.135	0.126	0.089	1CKT_A	1.10.30.10.3.1
4	pgenthreader.1	71.382	0.159	0.150	0.113	1GT0_D	1.10.30.10.2.1
5	rpsblast.8	9e-29	0.162	0.155	0.125	1GT0_D	1.10.30.10.2.1
6	ffas.11	-0.372E+02	0.105	0.097	0.064	1HRY_A	1.10.30.10.2.1
7	pgenthreader.8	60.688	0.102	0.094	0.064	1HRY_A	1.10.30.10.2.1
8	ffas.8	-0.389E+02	0.138	0.130	0.098	1I11_A	1.10.30.10.2.2
9	pgenthreader.10	55.457	0.134	0.127	0.098	1I11_A	1.10.30.10.2.2
10	rpsblast.9	2e-28	0.134	0.127	0.098	1I11_A	1.10.30.10.2.2

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.