Pcons.net Protein Structure Prediction Meta Server Thursday, October 28 2021
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© Arne Elofsson

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23060 : NP_003097.1 TRANSCRIPTION FACTOR SOX-2 [HOMO SAPIENS]

Your submitted sequence: sequence (317 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PMODELLER (only used 49 models from 4 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
blast.9
4e-050.1090.1010.069 1CG7_A1.10.30.10.4.2
2
ffas.20
-0.321E+020.1400.1370.123 1CG7_A1.10.30.10.4.2
3
rpsblast.3
1e-310.1350.1260.089 1CKT_A1.10.30.10.3.1
4
pgenthreader.1
71.3820.1590.1500.113 1GT0_D1.10.30.10.2.1
5
rpsblast.8
9e-290.1620.1550.125 1GT0_D1.10.30.10.2.1
6
ffas.11
-0.372E+020.1050.0970.064 1HRY_A1.10.30.10.2.1
7
pgenthreader.8
60.6880.1020.0940.064 1HRY_A1.10.30.10.2.1
8
ffas.8
-0.389E+020.1380.1300.098 1I11_A1.10.30.10.2.2
9
pgenthreader.10
55.4570.1340.1270.098 1I11_A1.10.30.10.2.2
10
rpsblast.9
2e-280.1340.1270.098 1I11_A1.10.30.10.2.2
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
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