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© Arne Elofsson

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23060 : NP_003097.1 TRANSCRIPTION FACTOR SOX-2 [HOMO SAPIENS]

Your submitted sequence: sequence (317 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PCONS (only used 49 models from 4 methods the score is NOT RELIABLE, models are sorted by Pcomb score)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
ffas.4
-0.401E+020.1670.1550.108 3F27_DN/A
2
rpsblast.8
9e-290.1620.1550.125 1GT0_D1.10.30.10.2.1
3
ffas.7
-0.389E+020.1620.1530.117 3U2B_CN/A
4
ffas.1
-0.409E+020.1620.1530.117 1O4X_B1.10.30.10.2.1
5
pgenthreader.2
67.8580.1570.1500.123 1J46_A1.10.30.10.2.1
6
ffas.3
-0.403E+020.1570.1500.122 1J47_A1.10.30.10.2.1
7
pgenthreader.1
71.3820.1590.1500.113 1GT0_D1.10.30.10.2.1
8
pgenthreader.5
65.2340.1600.1500.108 3F27_DN/A
9
blast.2
9e-310.1600.1490.107 4S2Q_DN/A
10
rpsblast.7
4e-290.1550.1480.122 1J47_A1.10.30.10.2.1
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
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