Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Thursday, April 25 2024

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Submission

23028 : T0988 YP_006383572, GOOSE ADENOVIRUS 4, 204 RESIDUES|

Your submitted sequence: sequence (204 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PMODELLER (only used 39 models from 4 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.7	-0.631E+01	0.027	0.029	0.036	1AHJ_B	1.10.472.20.1.1 2.30.30.50.1.1
2	rpsblast.10	16	0.031	0.047	0.109	1D2S_A	2.60.120.200.25.1
3	blast.5	5.6	0.016	0.005	-0.037	1DY6_B	3.40.710.10.2.3
4	blast.6	6.7	0.017	0.011	-0.011	1EB9_A	3.40.50.1820.12.1
5	pgenthreader.6	46.625	0.047	0.076	0.193	1H7Z_A	2.60.90.10.2.1
6	ffas.10	-0.602E+01	0.032	0.030	0.022	1NUK_A	2.60.120.260.4.2
7	ffas.6	-0.638E+01	0.024	0.001	-0.090	1OR7_A	N/A
8	rpsblast.3	0.050	0.009	0.006	-0.004	1QZV_U	N/A
9	rpsblast.7	4.0	0.013	-0.001	-0.055	1QZV_U	N/A
10	rpsblast.8	14	0.013	0.010	-0.002	1QZV_U	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.