Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Saturday, April 20 2024

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Submission

23000 : serpin B12

Your submitted sequence: sequence (405 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: lomets itasser hhpred2

PMODELLER (only used 48 models from 4 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	ffas.20	-0.107E+03	0.478	0.544	0.809	1ATT_A	2.30.39.10.8.1 3.30.497.10.7.1
2	ffas.1	-0.126E+03	0.486	0.564	0.875	1BY7_A	2.30.39.10.1.1 3.30.497.10.2.1
3	ffas.5	-0.120E+03	0.463	0.530	0.796	1HLE_A	2.30.39.10.6.2 3.30.497.10.2.4
4	blast.8	3e-07	0.051	0.044	0.016	1HLE_B	N/A
5	blast.6	1e-24	0.510	0.565	0.787	1IMV_A	2.30.39.10.15.1 3.30.497.10.10.1
6	ffas.16	-0.107E+03	0.442	0.511	0.785	1IZ2_A	2.30.39.10.3.1 3.30.497.10.4.1
7	blast.9	6e-04	0.042	0.036	0.011	1JJO_E	N/A
8	pgenthreader.10	158.218	0.477	0.550	0.844	1JMO_A	3.30.497.10.5.1 2.30.39.10.12.1
9	ffas.18	-0.107E+03	0.470	0.535	0.797	1K9O_I	3.30.497.10.8.1 2.30.39.10.14.1
10	blast.7	4e-21	0.289	0.314	0.412	1MTP_A	3.30.497.10.1.1 2.30.39.10.9.1

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.