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© Arne Elofsson

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22990 : NP_723045.1 COLLAGEN TYPE IV ALPHA 1, ISOFORM B [DROSOPHILA MELANOGASTER]

Your submitted sequence: sequence (280 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: itasser hhpred2

rpsblast
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1N/A 4e-21N/AN/AN/AN/A1m1j_A1.20.5.50.14.1 N/A
2N/A 1e-20N/AN/AN/AN/A1m1j_A1.20.5.50.14.1 N/A
3N/A 8e-18N/AN/AN/AN/A1m1j_A1.20.5.50.14.1 N/A
4N/A 1e-14N/AN/AN/AN/A1m1j_A1.20.5.50.14.1 N/A
5N/A 2e-09N/AN/AN/AN/A1m1j_A1.20.5.50.14.1 N/A
6 2e-090.0100.0220.072 4KML_AN/A
7 7e-090.0120.0270.088 4KML_AN/A
8 2e-080.0070.0220.082 4KML_AN/A
9 3e-080.0070.0260.103 4KML_AN/A
10 4e-080.0060.0250.099 4KML_AN/A
 
References
Marchler-Bauer A et al (2002) "CDD: a database of conserved domain alignments with links to domain three-dimensional structure." Nucleic Acids Res 30(1), 281-283. [LINK]
 
 
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