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© Arne Elofsson

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22990 : NP_723045.1 COLLAGEN TYPE IV ALPHA 1, ISOFORM B [DROSOPHILA MELANOGASTER]

Your submitted sequence: sequence (280 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: itasser hhpred2

PMODELLER (only used 35 models from 4 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
ffas.8
-0.137E+020.0000.0200.101 1NAY_A1.20.5.320.1.2
2
ffas.10
-0.869E+010.0000.0090.047 1O91_A2.60.120.40.7.1
3
pgenthreader.10
44.3140.0120.0920.413 1S58_A2.170.30.10.3.1
4
ffas.3
-0.296E+020.0090.0410.170 1WCK_AN/A
5
ffas.5
-0.150E+020.0080.0380.157 2PNE_AN/A
6
pgenthreader.4
38.5270.0170.0460.163 2PNE_AN/A
7
pgenthreader.5
38.5270.0030.0270.125 2PNE_AN/A
8
ffas.4
-0.162E+020.0100.0390.153 3BOG_AN/A
9
ffas.9
-0.101E+020.0060.0190.069 3DMW_AN/A
10
pgenthreader.6
46.7840.0090.0920.424 3FBY_AN/A
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
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