Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Wednesday, April 24 2024

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Submission

22990 : NP_723045.1 COLLAGEN TYPE IV ALPHA 1, ISOFORM B [DROSOPHILA MELANOGASTER]

Your submitted sequence: sequence (280 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: itasser hhpred2

PCONS (only used 35 models from 4 methods the score is NOT RELIABLE, models are sorted by Pcomb score)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	pgenthreader.10	44.314	0.012	0.092	0.413	1S58_A	2.170.30.10.3.1
2	pgenthreader.6	46.784	0.009	0.092	0.424	3FBY_A	N/A
3	ffas.2	-0.521E+02	0.017	0.078	0.320	3HQV_A	N/A
4	ffas.1	-0.525E+02	0.016	0.076	0.314	3HQV_B	N/A
5	blast.4	1e-06	0.008	0.074	0.340	3HR2_B	N/A
6	ffas.6	-0.141E+02	0.011	0.053	0.219	3IYO_A	N/A
7	blast.8	2e-05	0.009	0.051	0.220	3HR2_B	N/A
8	blast.9	3e-05	0.007	0.051	0.226	3HR2_B	N/A
9	blast.5	6e-06	0.013	0.050	0.199	3HR2_B	N/A
10	pgenthreader.4	38.527	0.017	0.046	0.163	2PNE_A	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.