Pcons.net Protein Structure Prediction Meta Server Saturday, August 24 2019
Main Menu
Submission
Queue
About Pcons
About Pmodeller
About Pcons.net
Database status
Download




© Arne Elofsson

SciLifeLab Logotype nbis Logotype
SeRC Logotype Stockholm University logotype EGI logotype
22990 : NP_723045.1 COLLAGEN TYPE IV ALPHA 1, ISOFORM B [DROSOPHILA MELANOGASTER]

Your submitted sequence: sequence (280 aa)

Ready methods: PCONS PMODELLER blast ffas pgenthreader rpsblast
Queued locally: itasser hhpred2

PCONS (only used 35 models from 4 methods the score is NOT RELIABLE, models are sorted by Pcomb score)
RankModelMethod ScorePconsPcombProQ2ProQ / ProQresSumTemplateCATHAlignment
1
pgenthreader.10
44.3140.0120.0920.413 1S58_A2.170.30.10.3.1
2
pgenthreader.6
46.7840.0090.0920.424 3FBY_AN/A
3
ffas.2
-0.521E+020.0170.0780.320 3HQV_AN/A
4
ffas.1
-0.525E+020.0160.0760.314 3HQV_BN/A
5
blast.4
1e-060.0080.0740.340 3HR2_BN/A
6
ffas.6
-0.141E+020.0110.0530.219 3IYO_AN/A
7
blast.8
2e-050.0090.0510.220 3HR2_BN/A
8
blast.9
3e-050.0070.0510.226 3HR2_BN/A
9
blast.5
6e-060.0130.0500.199 3HR2_BN/A
10
pgenthreader.4
38.5270.0170.0460.163 2PNE_AN/A
 
References
Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.
 
 
© 2006 Stockholm University, Stockholm Bioinformatics Center