Pcons.net Protein Structure Prediction

Pcons.net Protein Structure Prediction Meta Server

Thursday, April 25 2024

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Submission

22981 : lcc1

Your submitted sequence: sequence (539 aa)

Ready methods: PCONS PMODELLER blast rpsblast
Queued locally: lomets itasser hhpred2

PMODELLER (only used 19 models from 2 methods the score is NOT RELIABLE, models are sorted by average local predicted S-score (ProQres)

Rank	Model	Method Score	Pcons	Pcomb	ProQ2	Template	CATH
1	blast.8	1e-34	0.238	0.240	0.247	1AOZ_B	2.60.40.420.17.1 2.60.40.420.36.1 2.60.40.420.37.1
2	rpsblast.1	8e-68	0.339	0.366	0.472	1AOZ_B	2.60.40.420.17.1 2.60.40.420.36.1 2.60.40.420.37.1
3	rpsblast.3	9e-61	0.591	0.656	0.916	1HFU_A	2.60.40.420.11.1 2.60.40.420.27.1 2.60.40.420.29.2
4	blast.5	0.0	0.513	0.544	0.667	1KYA_B	2.60.40.420.11.2 2.60.40.420.27.2 2.60.40.420.29.3
5	rpsblast.7	3e-56	0.488	0.519	0.641	1V10_A	2.60.40.420.11.2 2.60.40.420.27.2 2.60.40.420.29.1
6	blast.1	0.0	0.508	0.540	0.668	2QT6_B	N/A
7	rpsblast.8	2e-55	0.513	0.558	0.740	2XYB_A	N/A
8	rpsblast.6	1e-57	0.173	0.230	0.460	2ZOO_A	N/A
9	blast.10	1e-16	0.228	0.231	0.245	3G5W_D	N/A
10	rpsblast.4	9e-59	0.473	0.515	0.682	3KW7_B	N/A

References

Automatic consensus based fold recognition using Pcons, ProQ and Pmodeller. Björn Wallner, Huisheng Fang and Arne Elofsson (2003). Proteins. 53 Suppl 6:534-541.
Pcons5: combining consensus, structural evaluation and fold recognition scores. Björn Wallner and Arne Elofsson (2005). Bioinformatics., 21(23):4248-4254.
Identification of correct regions in protein models using structural, alignment and consensus information. Björn Wallner and Arne Elofsson (2006). Protein Sci., 15(4):900-913.