Pcons.net Protein Structure Prediction Meta Server Wednesday, August 21 2019
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© Arne Elofsson

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Schematic overview of the alignment
To get a quick overview of the quality of the alignment it is color coded based on the secondary structure. For the template structure STRIDE is used to assign secondary structure based on the coordinates, for the target sequence PSIPRED is used to assign secondary structure each residue.

Both the target and the template sequence are represented as full length sequences, making it possible to see which parts of the target and template that are covered; and if the alignment spans only a part of the whole template structure.

 
 
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